SBOL Libraries

SBOL Libraries

These libraries allow developers to integrate the SBOL data model into their software tools. These libraries are available in C/C++, Java, JavaScript, and Python. There are libraries avaible for the SBOL 2 and SBOL 3 data standard. For more information see the SBOL Standard Website.

Contributors

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Mike Arpaia

Research Assistant

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Zhen Zhang

Utah State University, Assistant Professor

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Tramy Nguyen

Raytheon BBN Technologies, Research Scientist/Software Engineer

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Michael Zhang

Google, Engineer

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Meher Samineni

REI, Software Engineer

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Zach Zundel

Facebook, Product Engineer

Publications

  • Synthetic biology open language (SBOL) version 3.0.0
  • Synthetic biology open language visual (SBOL visual) version 2.2
  • Extending SynBioHub’s Functionality with Plugins
  • SBOL Visual 2 Ontology
  • The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering
  • Asynchronous Genetic Design
  • Improving Authentication and Authorization on SynBioHub
  • SBOLExplorer: Data Infrastructure and Data Mining for Genetic Design Repositories
  • A Computational Workflow for the Automated Generation of Models of Genetic Designs
  • pySBOL: A Python Package for Genetic Design Automation and Standardization
  • SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information
  • Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL)
  • Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019
  • Synthetic Biology Open Language (SBOL) Version 2.3
  • Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1
  • SBOLExplorer: Data Infrastructure and Data Mining for Genetic Design Repositories
  • Software Compliance Testing for Workflows Using the Synthetic Biology Open Language
  • sboljs: Bringing the Synthetic Biology Open Language to the Web Browser
  • Synthetic Biology Open Language (SBOL) Version 2.2.0
  • SBOLDesigner: A Hierarchical Genetic Design Editor
  • Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
  • SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology
  • A Validator and Converter for the Synthetic Biology Open Language
  • SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design
  • SBOLme: a Repository of SBOL Parts for Metabolic Engineering
  • A standard-enabled workflow for synthetic biology
  • Synthetic Biology Open Language (SBOL) Version 2.1.0
  • A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language
  • Sharing Structure and Function in Biological Design with SBOL 2.0
  • SBOL Visual: A Graphical Language for Genetic Designs
  • libSBOLj 2.0: A Java Library to Support SBOL 2.0
  • Synthetic Biology Open Language (SBOL) Version 2.0.0
  • Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language
  • Computational Synthetic Biology: Progress and the Road Ahead
  • Technology mapping of genetic circuit designs
  • The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
  • A Methodology to Annotate Systems Biology Markup Language Models with the Synthetic Biology Open Language