gene expression

Learning Genetic Regulatory Network Connectivity from Time Series Data

Recent experimental advances facilitate the collection of time series data that indicate which genes in a cell are expressed. This information can be used to understand the genetic regulatory network that generates the data. Typically, Bayesian …

iSSA: An incremental stochastic simulation algorithm for genetic circuits

Researchers are now developing synthetic genetic circuits to manipulate the biochemical processes within living cells. In order to model and predict the behavior of these circuits, the designer must account for numerous reactions among many chemical …